Source code for dataval.quality

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
Handling of TESS data quality flags.

.. codeauthor:: Rasmus Handberg <>

import numpy as np

[docs]class QualityFlagsBase(object):
[docs] @classmethod def decode(cls, quality): """ Converts a QUALITY value into a list of human-readable strings. This function takes the QUALITY bitstring that can be found for each cadence in TESS data files and converts into a list of human-readable strings explaining the flags raised (if any). Parameters: quality (int): Value from the 'QUALITY' column of a TESS data file. Returns: list of str: List of human-readable strings giving a short description of the quality flags raised. Returns an empty list if no flags raised. """ result = [] for flag in cls.STRINGS.keys(): if quality & flag != 0: result.append(cls.STRINGS[flag]) return result
[docs] @classmethod # noqa: A003 def filter(cls, quality, flags=None): """ Filter quality flags against a specific set of flags. Parameters: quality (integer or ndarray): Quality flags. flags (integer bitmask): Default=``TESSQualityFlags.DEFAULT_BITMASK``. Returns: ndarray: ``True`` if quality DOES NOT contain any of the specified ``flags``, ``False`` otherwise. """ if flags is None: flags = cls.DEFAULT_BITMASK return (quality & flags == 0)
[docs] @staticmethod def binary_repr(quality): """ Binary representation of the quality flag. Parameters: quality (int or ndarray): Quality flag. Returns: string: Binary representation of quality flag. String will be 32 characters long. """ if isinstance(quality, (np.ndarray, list, tuple)): return np.array([np.binary_repr(q, width=32) for q in quality]) else: return np.binary_repr(quality, width=32)
[docs]class DatavalQualityFlags(QualityFlagsBase): MagVsFluxHigh = 1 MagVsFluxLow = 2 FluxFFIOverTPF = 4 FluxTPFOverFFI = 8 MinimalMask = 16 SmallMask = 32 LargeMask = 64 SmallStamp = 128 LowPTP = 256 LowRMS = 512 InvalidContamination = 1024 ContaminationOne = InvalidContamination # Alias for older name ContaminationHigh = 2048 InvalidFlux = 4096 InvalidNoise = 8192 # Default bitmask DEFAULT_BITMASK = (InvalidFlux | InvalidContamination | SmallMask | LargeMask | InvalidNoise) # Pretty string descriptions for each flag STRINGS = { MagVsFluxHigh: "Star has higher flux than given by magnitude relation", MagVsFluxLow: "Star has lower flux than given by magnitude relation", FluxFFIOverTPF: "Star has higher measured flux in FFIs than TPFs", FluxTPFOverFFI: "Star has higher measured flux in TPFs than FFIs", MinimalMask: "Star has minimum 4x4 mask", SmallMask: "Star has smaller mask than general relation", LargeMask: "Star has larger mask than general relation", SmallStamp: "Smaller stamp than default", LowPTP: "PTP lower than theoretical", LowRMS: "RMS lower than theoretical", InvalidContamination: "Invalid contamination", ContaminationHigh: "Contamination high", InvalidFlux: "Invalid mean flux (not finite or negative)" }